Updating my original post of Jan 2009 to reflect updated information about the CM RAP.
Microsoft PFE has had a ConfigMgr Health Check available for about about a year and half and we are now in the final stages of converting that delivery into a RAP (Risk Assessment Program). The offical name will be "CMRAP (Risk and Health Assessment Program for Configuration Manager)". This delivery should be released around holiday 2010. If your organization needs a CMRAP performed please contact your MS TAM.
Also here is a link to the Facebook page for the Microsoft RAP program: http://facebook.com/MicrosoftRAPs